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tree)
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accessibility/mousetweaks -> accessibility/mousetweaks3
accessibility/orca -> accessibility/orca3
audio/libcanberra -> audio/libcanberra-gtk3?
databases/evolution-data-server -> databases/evolution-data-server3
databases/libgda4 -> libgda5
databases/libgda4-bdb -> libgda5-bdb
databases/libgda4-jdbc -> libgda5-jdbc
databases/libgda4-mdb -> libgda5-mdb
databases/libgda4-mysql -> libgda5-mysql
databases/libgda4-postgresql -> libgda5-postgresql
deskutils/gnome-utils -> deskutils/gnome-utils3
deskutils/gucharmap -> desktutils/gucharmap3
devel/glade3 -> devel/glade
devel/libgdata -> devel/libgdata08
editors/gedit -> editors/gedit3
editors/gedit-plugins -> editors/gedit-plugins3
games/gnome-games -> games/gnome-games3
graphics/eog -> graphics/eog3
graphics/eog-plugins -> graphics/eog-plugins3
graphics/evince -> graphics/evince3
graphics/goocanvas -> graphics/goocanvas2
graphics/goocanvasmm -> graphics/goocanvasmm2
mail/evolution -> mail/evolution3
mail/evolution-exchange -> mail/evolution-exchange3
mail/evolution-mapi -> mail/evolution-mapi3
math/gcalctool -> math/gcalctool3
misc/gnome-devel-docs -> misc/gnome-devel-docs3
misc/gnome-user-docs -> misc/gnome-user-docs3
multimedia/cheese -> multimedia/cheese3
net/avahi-gtk -> net/avahi-gtk3
net/libgweather -> net/libgweather3
net/vinagre -> net/vinagre3
net/vino -> net/vino3
security/gnome-keyring -> security/gnome-keyring3
sysutils/brasero -> sysutils/brasero3
sysutils/gconf-editor -> sysutils/gconf-editor3
sysutils/gnome-system-monitor -> sysutils/gnome-system-monitor3
www/epiphany -> www/epiphany3
www/epiphany-extensions -> www/epiphany-extensions3
www/gtkhtml3 -> www/gtkhtml4
www/webkit-gtk2 -> www/webkit-gtk3
x11-fm/nautilus -> x11-fm/nautilus3
x11-themes/gnome-themes -> x11-themes/gnome-themes3
x11-themes/gtk-engines2 -> x11-themes/gtk-engines3
x11-toolkits/gtk20 -> x11-toolkits/gtk30
x11-toolkits/gtkmm24 -> x11-toolkits/gtkmm30
x11-toolkits/gtksourceview2 -> x11-toolkits/gtksourceview3
x11-toolkits/libwnck -> x11-toolkits/libwnck3
x11-toolkits/unique -> x11-toolkits/libunique3
x11-toolkits/vte -> x11-toolkits/vte3
x11/gdm -> x11/gdm3
x11/gnome-desktop -> gnome-desktop3
x11/gnome-panel -> x11/gnome-panel3
x11/gnome-screensaver -> x11/gnome-screensaver3
x11/gnome-terminal -> x11/gnome-terminal3
x11/gnome2 -> x11/gnome3
x11/gnome2-lite -> x11/gnome3-lite
x11/libgnomekbd -> x11/libgnomekbd3
x11/yelp -> x11/yelp3
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